Phasik

the cell cycle as a temporal network

Phasik is a python package that was created to infer temporal phases in temporal networks. It contains various utility classes and functions that can be divided into two main parts:

  1. Build, analyse, and visualise temporal networks from time series data.
  2. Infer temporal phases by clustering the snapshots of the temporal network.

Docs: https://phasik.readthedocs.io/
Code: https://gitlab.com/habermann_lab/phasik/.